Edit Your Collection

October 16, 2023

16 Oct Edit Your Collection

Posted at 14:46h in by

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HTML BlockResponses to the following questions (1-28) will be components of the USCCN online searchable database available to all users.
1. Name of Collection Point of ContactSkylar Carlson
2. Current PositionAssociate Professor of Chemistry
3. Collection phone number2099462600
4. Collection Address3601 Pacific Avenue
STOCKTON, CA 95211
US
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5. Collection emailEmail hidden; Javascript is required.
6. Collection website (if applicable)skylarcarlson.com
7. Collection name and abbreviationCarlson Aquatic Natural Products Library (CANPL)
9. Number of staff that work with the collection (if applicable)1
10. Organizational structure of the Collection:
  • Academia
11. What type of organisms are included in the Collection?
  • Fungi
  • Bacteria
12. Do you have sequencing data?Yes
Please specify what kind of dataSome genomes, some ID's
15. Please choose one of the following categories that best describes your collection.Research collection (industry or research collection; does not include a plan to distribute strains)
16. What host associations, if any, does your microbial collection have?
  • Water
17. What institution/entity currently houses your collection? (For example, Kansas State University, ARS, private entity)University of the Pacific
18. Is the institution able to guarantee its support to the Collection for the next three to five years?Yes
19. Does your collection have the ability to accept orphan collections at this time? If yes, please describe your capacity to do so.Yes
Capacity

Interested in actinomycete collections that are orphaned. Not able to accept human derived bacteria at this time.

20. Does your collection contain strains that are currently used or could be used for reference strains such as to identify human, animal or plant pathogens? If yes, please explainYes
Capacity

E. coli, Salmonella, Bacillus subtilis, Stapholococus aureus, S. epidermis

21. Do you utilize best practices guidelines for operation of your culture collection?
  • None of the Above
22. What is/are the mechanism(s) of availability and distribution?
  • Peer to peer for collaborations
23. What are the main subjects or fields of use relevant to your collection?
  • Ecology
  • General microbiology
  • Genetics
24. If applicable, what services does your Collection provide? Check all that apply
  • Not applicable
25. Does your Collection provide training opportunities on the following? Check all that apply
  • Does not provide training
26. If applicable, does your Collection provide consultation on the following? Check all that apply
  • Other (please explain)
Consultation

Willing to isolate bacteria from complex samples and cryopreserve.

28. Is the Collection willing, within reasonable limits and to the extent that the collection is public, to engage in the exchange of cultures with other collections within the framework of the USCCN?Yes
29. Is the Collection willing to engage, within the limits of its capacity to do so, in collaborative programs with other culture collections for the general betterment of the USCCN?Yes
30. Do you wish to be contacted by researchers and collaborators about your Collection?Yes
31. Would you be interested in collaborating on a project with samples combined from different repositories?Yes
HTML BlockResponses to the following questions (29-36) will NOT be components of the USCCN online database. Information provided will be for internal use only to enhance USCCN service to participants.
32. Is the future of your collection dependent on a single individual in the institution?Yes
33. Is there a contingency plan to be able to guarantee the existence of the collection for at least five years, such as at another institution? Please provide as much detail as possible.No
No Contingency Plan

Will add this to the ever growing to do list. Will evaluate best practices in certifying this collection.

34. Is your collection currently or in potential danger of becoming an orphan collection? If yes, what means do you have to save the collection? Please provide as much detail as possible.No
35. Would you like assistance with the orphan collection?No
36. What are the greatest needs of your collection at this time? (For example: stable funding, personnel needs, quality control procedures, capacity & equipment, visibility, etc.)

16s ID of bacteria and 18s ID of fungi.

37. Would you like your collection to be listed in the Global Biodiversity Information Facility (GBIF) https://www.gbif.org/No
38. Does the Collection support the USCCN mission, which is "to facilitate the safe and responsible utilization of microbial resources for research, education, industry, medicine, and agriculture for the betterment of humankind by providing opportunities for US culture collection workers to engage with each other and with the broader culture collection community."I agree to support the mission of the USCCN